- Class: 2
- Architecture: 2.60:Sandwich
- Topology: 2.60.130:Protocatechuate 3,4-Dioxygenase, subunit A
- Homology: 2.60.130.10:Aromatic compound dioxygenase
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1dlm | [A2] | [A2] | [A2] | 2 | FE:FE (III) ION LIO:[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE | |||
1dlq | [A2] | [A2] | [A2] | 2.3 | FE:FE (III) ION HG:MERCURY (II) ION LIO:[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE | |||
1dlt | [A2] | [A2] | [A2] | 1.9 | CAQ:CATECHOL FE:FE (III) ION LIO:[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE | |||
1dmh | [A2] | [A2] | [A2] | 1.7 | FE:FE (III) ION LIO:[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE MCT:4-METHYLCATECHOL | |||
1eo2 | [A12B12] | [A24] | [A24] | 2.25 | FE:FE (III) ION | |||
1eo9 | [A12B12] | [A24] | [A24] | 2 | FE:FE (III) ION SO4:SULFATE ION | |||
1eoa | [A12B12] | [A24] | [A24] | 2.15 | CYN:CYANIDE ION FE:FE (III) ION | |||
1eob | [A12B12] | [A24] | [A24] | 2.2 | DHB:3,4-DIHYDROXYBENZOIC ACID FE:FE (III) ION | |||
1eoc | [A12B12] | [A24] | [A24] | 2.25 | 4NC:4-NITROCATECHOL FE:FE (III) ION | |||
1s9a | [A2] | [A2] | [A2] | 2.47 | BEZ:BENZOIC ACID FE:FE (III) ION HGP:(1-HEXADECANOYL-2-TETRADECANOYL-GLYCEROL-3-YL)PHOSPHONYL CHOLINE TAM:TRIS(HYDROXYETHYL)AMINOMETHANE | |||
1tmx | [A2] | [A2] | [A2] | 1.75 | BEZ:BENZOIC ACID CL:CHLORIDE ION CU:COPPER (II) ION FE:FE (III) ION HGX:1-HEPTADECANOYL-2-TRIDECANOYL-3-GLYCEROL-PHOSPHONYLCHOLINE SO4:SULFATE ION | |||
1ykk | [A12B12] | [A24] | [A24] | 2.06 | CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE FE:FE (III) ION | |||
1ykl | [A12B12] | [A24] | [A24] | 2.25 | DHB:3,4-DIHYDROXYBENZOIC ACID FE:FE (III) ION | |||
1ykm | [A12B12] | [A24] | [A24] | 2.22 | CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE FE:FE (III) ION | |||
1ykn | [A12B12] | [A24] | [A24] | 2.06 | CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE DHB:3,4-DIHYDROXYBENZOIC ACID FE:FE (III) ION | |||
1yko | [A12B12] | [A24] | [A24] | 2.54 | CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE FE:FE (III) ION | |||
1ykp | [A12B12] | [A24] | [A24] | 2.41 | CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE DHB:3,4-DIHYDROXYBENZOIC ACID FE:FE (III) ION | |||
2azq | [A2] | [A2] | [A2] | 2.65 | FE:FE (III) ION PCF:1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE | |||
2boy | [A2] | [A2] | [A2] | 1.9 | BHO:BENZHYDROXAMIC ACID FE:FE (III) ION LPP:2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYLHEXADECANOATE MG:MAGNESIUM ION | |||
2bum | [A12B12] | [A24] | [A24] | 1.8 | FE:FE (III) ION OH:HYDROXIDE ION | |||
2buq | [A12B12] | [A24] | [A24] | 1.8 | CAQ:CATECHOL FE:FE (III) ION | |||
2bur | [A12B12] | [A24] | [A24] | 1.8 | FE:FE (III) ION PHB:P-HYDROXYBENZOIC ACID | |||
2but | [A12B12] | [A24] | [A24] | 1.85 | FE:FE (III) ION OH:HYDROXIDE ION | |||
2buu | [A12B12] | [A24] | [A24] | 1.8 | 4NC:4-NITROCATECHOL FE:FE (III) ION | |||
2buv | [A12B12] | [A24] | [A24] | 1.8 | DHB:3,4-DIHYDROXYBENZOIC ACID FE:FE (III) ION | |||
2buw | [A12B12] | [A24] | [A24] | 1.8 | FE:FE (III) ION PHB:P-HYDROXYBENZOIC ACID | |||
2bux | [A12B12] | [A24] | [A24] | 1.8 | FE:FE (III) ION OH:HYDROXIDE ION | |||
2buy | [A12B12] | [A24] | [A24] | 1.8 | CAQ:CATECHOL FE:FE (III) ION | |||
2buz | [A12B12] | [A24] | [A24] | 1.8 | 4NC:4-NITROCATECHOL FE:FE (III) ION | |||
2bv0 | [A12B12] | [A24] | [A24] | 1.8 | DHB:3,4-DIHYDROXYBENZOIC ACID FE:FE (III) ION | |||
2pcd | [A12B12] | [A24] | [A24] | 2.15 | FE:FE (III) ION | |||
2xsr | [A2] | [A2] | [A2] | 1.8 | FE:FE (III) ION PIE:1,2-DIACYL-SN-GLYCERO-3-PHOSPHOINOSITOL | |||
2xsu | [A2] | [A2] | [A2] | 1.6 | FE:FE (III) ION PIE:1,2-DIACYL-SN-GLYCERO-3-PHOSPHOINOSITOL | |||
2xsv | [A2] | [A2] | [A2] | 1.8 | FE:FE (III) ION PIE:1,2-DIACYL-SN-GLYCERO-3-PHOSPHOINOSITOL | |||
3hgi | [A2] | [A2] | [A2] | 1.94 | 6PL:(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE BEZ:BENZOIC ACID CO3:CARBONATE ION FE:FE (III) ION | |||
3hhx | [A2] | [A2] | [A2] | 2 | 6PL:(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE FE:FE (III) ION PYG:BENZENE-1,2,3-TRIOL | |||
3hhy | [A2] | [A2] | [A2] | 1.55 | 6PL:(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE CAQ:CATECHOL CL:CHLORIDE ION FE:FE (III) ION MG:MAGNESIUM ION | |||
3hj8 | [A2] | [A2] | [A2] | 2.4 | 4CL:4-CHLOROBENZENE-1,2-DIOL 6PL:(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE FE:FE (III) ION | |||
3hjq | [A2] | [A2] | [A2] | 2 | 6PL:(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE FE:FE (III) ION MBD:3-METHYLCATECHOL | |||
3hjs | [A2] | [A2] | [A2] | 1.8 | 6PL:(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE FE:FE (III) ION MCT:4-METHYLCATECHOL MG:MAGNESIUM ION | |||
3hkp | [A2] | [A2] | [A2] | 1.85 | 6PL:(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE DHB:3,4-DIHYDROXYBENZOIC ACID FE:FE (III) ION | |||
3i4v | [A2] | [A2] | [A2] | 2 | 3CE:3-CHLOROBENZENE-1,2-DIOL 6PL:(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE FE:FE (III) ION | |||
3i4y | [A2] | [A2] | [A2] | 1.85 | 35C:3,5-DICHLOROBENZENE-1,2-DIOL 6PL:(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE FE:FE (III) ION | |||
3i51 | [A2] | [A2] | [A2] | 1.8 | 45C:4,5-DICHLOROBENZENE-1,2-DIOL 6PL:(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE FE:FE (III) ION | |||
3lkt | [A12B12] | [A24] | [A24] | 1.65 | BME:BETA-MERCAPTOETHANOL CL:CHLORIDE ION FE:FE (III) ION GOL:GLYCEROL SO4:SULFATE ION TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | |||
3lmx | [A12B12] | [A24] | [A24] | 2.2 | BME:BETA-MERCAPTOETHANOL CL:CHLORIDE ION DHB:3,4-DIHYDROXYBENZOIC ACID FE:FE (III) ION GOL:GLYCEROL SO4:SULFATE ION | |||
3lxv | [A12B12] | [A24] | [A24] | 1.9 | 4NC:4-NITROCATECHOL BME:BETA-MERCAPTOETHANOL CL:CHLORIDE ION CO3:CARBONATE ION FE:FE (III) ION GOL:GLYCEROL SO4:SULFATE ION TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | |||
3mfl | [A12B12] | [A24] | [A24] | 1.78 | BME:BETA-MERCAPTOETHANOL CL:CHLORIDE ION CO3:CARBONATE ION DHY:2-(3,4-DIHYDROXYPHENYL)ACETIC ACID FE:FE (III) ION GOL:GLYCEROL SO4:SULFATE ION | |||
3mi1 | [A12B12] | [A24] | [A24] | 1.74 | BME:BETA-MERCAPTOETHANOL CL:CHLORIDE ION FE:FE (III) ION GOL:GLYCEROL SO4:SULFATE ION | |||
3mi5 | [A12B12] | [A24] | [A24] | 1.78 | BME:BETA-MERCAPTOETHANOL CAQ:CATECHOL CL:CHLORIDE ION FE:FE (III) ION GOL:GLYCEROL SO4:SULFATE ION | |||
3mv4 | [A12B12] | [A24] | [A24] | 1.59 | BME:BETA-MERCAPTOETHANOL CO3:CARBONATE ION FE:FE (III) ION GOL:GLYCEROL SO4:SULFATE ION | |||
3mv6 | [A12B12] | [A24] | [A24] | 1.86 | BME:BETA-MERCAPTOETHANOL CL:CHLORIDE ION DHB:3,4-DIHYDROXYBENZOIC ACID FE:FE (III) ION GOL:GLYCEROL SO4:SULFATE ION | |||
3n9t | [A2] | [A2] | [A2] | 2 | FE:FE (III) ION FLC:CITRATE ANION HGX:1-HEPTADECANOYL-2-TRIDECANOYL-3-GLYCEROL-PHOSPHONYLCHOLINE | |||
3o32 | [A2] | [A2] | [A2] | 2.85 | 35C:3,5-DICHLOROBENZENE-1,2-DIOL FE:FE (III) ION MYY:(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYLPALMITATE | |||
3o5u | [A2] | [A2] | [A2] | 2.35 | CL:CHLORIDE ION DHB:3,4-DIHYDROXYBENZOIC ACID FE:FE (III) ION GOL:GLYCEROL MYY:(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYLPALMITATE | |||
3o6j | [A2] | [A2] | [A2] | 2.9 | CL:CHLORIDE ION FE:FE (III) ION HQN:BENZENE-1,2,4-TRIOL MYY:(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYLPALMITATE | |||
3o6r | [A2] | [A2] | [A2] | 2.6 | FE:FE (III) ION MYY:(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYLPALMITATE PYG:BENZENE-1,2,3-TRIOL | |||
3pca | [A12B12] | [A24] | [A24] | 2.2 | BME:BETA-MERCAPTOETHANOL DHB:3,4-DIHYDROXYBENZOIC ACID FE:FE (III) ION | |||
3pcb | [A12B12] | [A24] | [A24] | 2.19 | 3HB:3-HYDROXYBENZOIC ACID BME:BETA-MERCAPTOETHANOL FE:FE (III) ION | |||
3pcc | [A12B12] | [A24] | [A24] | 1.98 | BME:BETA-MERCAPTOETHANOL FE:FE (III) ION PHB:P-HYDROXYBENZOIC ACID | |||
3pcd | [A12B12] | [A24] | [A24] | 2.1 | BME:BETA-MERCAPTOETHANOL CO3:CARBONATE ION FE:FE (III) ION | |||
3pce | [A12B12] | [A24] | [A24] | 2.06 | 3HP:3-HYDROXYPHENYLACETATE BME:BETA-MERCAPTOETHANOL FE:FE (III) ION | |||
3pcf | [A12B12] | [A24] | [A24] | 2.15 | BME:BETA-MERCAPTOETHANOL FE:FE (III) ION FHB:3-FLUORO-4-HYDROXYBENZOIC ACID | |||
3pcg | [A12B12] | [A24] | [A24] | 1.96 | 4HP:4-HYDROXYPHENYLACETATE BME:BETA-MERCAPTOETHANOL FE:FE (III) ION | |||
3pch | [A12B12] | [A24] | [A24] | 2.05 | BME:BETA-MERCAPTOETHANOL CHB:3-CHLORO-4-HYDROXYBENZOIC ACID FE:FE (III) ION | |||
3pci | [A12B12] | [A24] | [A24] | 2.21 | BME:BETA-MERCAPTOETHANOL FE:FE (III) ION IHB:3-IODO-4-HYDROXYBENZOIC ACID | |||
3pcj | [A12B12] | [A24] | [A24] | 2.13 | BME:BETA-MERCAPTOETHANOL FE:FE (III) ION INO:2-HYDROXYISONICOTINIC ACID N-OXIDE | |||
3pck | [A12B12] | [A24] | [A24] | 2.13 | BME:BETA-MERCAPTOETHANOL FE:FE (III) ION NNO:6-HYDROXYISONICOTINIC ACID N-OXIDE | |||
3pcl | [A12B12] | [A24] | [A24] | 2.15 | CYN:CYANIDE ION FE:FE (III) ION INO:2-HYDROXYISONICOTINIC ACID N-OXIDE | |||
3pcm | [A12B12] | [A24] | [A24] | 2.25 | CYN:CYANIDE ION FE:FE (III) ION NNO:6-HYDROXYISONICOTINIC ACID N-OXIDE | |||
3pcn | [A12B12] | [A24] | [A24] | 2.4 | BME:BETA-MERCAPTOETHANOL DHY:2-(3,4-DIHYDROXYPHENYL)ACETIC ACID FE:FE (III) ION | |||
3t63 | [A12B12] | [A24] | [A24] | 1.54 | BME:BETA-MERCAPTOETHANOL FE:FE (III) ION GOL:GLYCEROL SO4:SULFATE ION | |||
3t67 | [A12B12] | [A24] | [A24] | 1.67 | CAQ:CATECHOL FE:FE (III) ION GOL:GLYCEROL SO4:SULFATE ION | |||
3th1 | [A2] | [A2] | [A2] | 3.4 | 3PH:1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE ACT:ACETATE ION DTD:DITHIANE DIOL FE:FE (III) ION GOL:GLYCEROL MG:MAGNESIUM ION | |||
4ilt | [A] | [A] | [A] | 2.55 | CL:CHLORIDE ION FE:FE (III) ION | |||
4ilv | [A] | [A] | [A] | 2.06 | EDO:1,2-ETHANEDIOL FE:FE (III) ION | |||
4who | [A12B8C4] | [A24] | [A24] | 1.83 | BCT:BICARBONATE ION BME:BETA-MERCAPTOETHANOL CSO:S-HYDROXYCYSTEINE FE:FE (III) ION | |||
4whp | [A12B8C4] | [A24] | [A24] | 1.54 | BCT:BICARBONATE ION BME:BETA-MERCAPTOETHANOL FE:FE (III) ION MHO:S-OXYMETHIONINE SO4:SULFATE ION | |||
4whq | [A12B12] | [A24] | [A24] | 1.78 | 3N8:4-FLUOROBENZENE-1,2-DIOL 3N9:(6S)-4-FLUORO-6-HYDROPEROXY-6-HYDROXYCYCLOHEXA-2,4-DIEN-1-ONE BCT:BICARBONATE ION BME:BETA-MERCAPTOETHANOL CL:CHLORIDE ION FE:FE (III) ION GOL:GLYCEROL NA:SODIUM ION SO4:SULFATE ION | |||
4whr | [A12B8C4] | [A24] | [A24] | 1.58 | 3N8:4-FLUOROBENZENE-1,2-DIOL 3NJ:4-FLUOROOXEPINE-2,7-DIONE BME:BETA-MERCAPTOETHANOL CL:CHLORIDE ION CSO:S-HYDROXYCYSTEINE FE:FE (III) ION MHO:S-OXYMETHIONINE TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | |||
4whs | [A12B8C4] | [A24] | [A24] | 1.35 | 3N8:4-FLUOROBENZENE-1,2-DIOL BME:BETA-MERCAPTOETHANOL CL:CHLORIDE ION CSO:S-HYDROXYCYSTEINE FE:FE (III) ION MHO:S-OXYMETHIONINE MUC:[(2S)-5-OXO-2,5-DIHYDROFURAN-2-YL]ACETIC ACID SO4:SULFATE ION | |||
5td3 | [A2] | [A2] | [A2] | 1.75 | CL:CHLORIDE ION EDO:1,2-ETHANEDIOL MG:MAGNESIUM ION PTY:PHOSPHATIDYLETHANOLAMINE ZN:ZINC ION | |||
5umh | [A2] | [A2] | [A2] | 1.35 | CA:CALCIUM ION CL:CHLORIDE ION EDO:1,2-ETHANEDIOL PG4:TETRAETHYLENE GLYCOL PG6:1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE ZN:ZINC ION | |||
5vxt | [A2] | [A2] | [A2] | 1.75 | CAQ:CATECHOL CL:CHLORIDE ION EDO:1,2-ETHANEDIOL FE:FE (III) ION PTY:PHOSPHATIDYLETHANOLAMINE |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA